In Silico Fermentation is pleased to announce our first training course focused on genome-scale metabolic reconstructions and their use for constraint-based metabolic analysis. The training focuses on developing a functional knowledge of metabolic reconstructions and more in-depth understanding of flux balance analysis (FBA) and its most important variants. Key concepts are demonstrated through computational exercises […]

In Silico Fermentation is pleased to announce the release of MediumFBAtutorial, a free MATLAB application that provides two tutorials that demonstrate the use of our MediumFBA app for integrated medium design and flux balance analysis (FBA). Using genome-scale metabolic reconstructions from the AGORA resource, users are guided through an intuitive workflow in which they identify […]

We are pleased to announce the free release of MediumFBA version 2.0, a a MATLAB application that integrates the medium design and flux balance analysis (FBA) problems to allow more efficient analysis of metabolic models. Originally released in February 2024, MediumFBA generates growth media that ensure monoculture growth of all included strains, where the metabolic […]